TNMplot: differential gene expression analysis in Tumor, Normal, and Metastatic tissues.


The pan-cancer analysis page displays the expression range for a selected gene across all tissues in all available normal and tumor RNA Seq data.


Siginificant differences by Mann-Whitney U test are marked with red*








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Database setup:
TNMplot includes 56,938 unique samples:
Genechip from GEO: 3,691 normal, 29,376 tumor and 453 metastasis
RNA-seq from GTex: 11,215 normal
RNA-seq from TCGA: 730 normal, 9,886 tumor and 394 metastasis
RNA-seq from TARGET: 12 normal, 1,180 tumor and 1 metastasis
Gene summary:
Please kindly cite our paper:
A. Bartha, B. Gyorffy, TNMplot.com: A Web Tool for the Comparison of Gene Expression in Normal, Tumor and Metastatic Tissues Int. J. Mol. Sci. 2021, 22(5), 2622;

Copyright ©: Department of Bioinformatics, Semmelweis University 2021-2023
Check our other webtools: http://www.kmplot.com ; http://www.rocplot.org ; http://www.mutarget.com ; https://www.multipletesting.com/

The pan-cancer heatmap analysis page displays the median expression values for a selected gene set across all tissues in all available normal and tumor RNA Seq data.

















Overview of the plotting tools available in the new TNM plotter

Pan-cancer


Pan-cancer box plot


Gene expression comparison


Compare Tumor and Normal


Correlation analysis


Gene vs gene correlation


Functional analysis


Gene Ontology analysis



Pan-cancer heatmap



Compare Tumor,Normal and Metastasis



Gene vs all genes correlation



GO for differentially expressed genes




Multi-gene analysis



Correlation matrix analysis



KEGG analysis






Academic researchers: provided that the original publications are properly cited, the use of www.tnmplot.com is free for scientific projects. Please see below the complete Terms of Use.

Commercial entities: please contact us at gyorffy@kmplot.com.

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TERMS OF USE

Last updated June 1, 2023

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