TNMplot: differential gene expression analysis in Tumor, Normal, and Metastatic tissues.


The pan-cancer analysis page displays the expression range for a selected gene across all tissues in all available normal and tumor RNA Seq data.


Siginificant differences by Mann-Whitney U test are marked with red*








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Database setup:
TNMplot includes 56,938 unique samples:
Genechip from GEO: 3,691 normal, 29,376 tumor and 453 metastasis
RNA-seq from GTex: 11,215 normal
RNA-seq from TCGA: 730 normal, 9,886 tumor and 394 metastasis
RNA-seq from TARGET: 12 normal, 1,180 tumor and 1 metastasis
Gene summary:

Copyright ©: Department of Bioinformatics, Semmelweis University 2021-2022
Check our other webtools: http://www.kmplot.com ; http://www.rocplot.org ; http://www.mutarget.com ; https://www.multipletesting.com/

The pan-cancer heatmap analysis page displays the median expression values for a selected gene set across all tissues in all available normal and tumor RNA Seq data.

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Overview of the plotting tools available in the new TNM plotter

Pan-cancer


Pan cancer box-plot


Gene expression comparison


Compare Tumor and Normal


Correlation analysis


Gene vs gene correlation



Pan cancer heatmap



Compare Tumor,Normal and Metastasis



Gene vs all gene correlation




Multi-gene analysis



Correlation matrix analysis