TNMplot: differential gene expression analysis in Tumor, Normal and Metastatic tissues


The pan-cancer analysis page displays the expression range for a selected gene across all tissues in all available normal and tumor RNA Seq data.


Siginificant differences by Mann-Whitney U test are marked with red*
In case of low expression values we suggest to directly compare tumor to normal
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Database setup:
TNMplot includes 56,938 unique multilevel quality controlled samples:
Genechip from GEO: 3,691 normal, 29,376 tumor and 453 metastasis
RNA-seq from GTex: 11,215 normal
RNA-seq from TCGA: 730 normal, 9,886 tumor and 394 metastasis
RNA-seq from TARGET: 12 normal, 1,180 tumor and 1 metastasis
Gene overview:
How to cite:
manuscript submitted for publication
Copyright (C):
Department of Bioinformatics,
Semmelweis University
2020
The Normal and Tumor analysis page provides detailed analysis in multiple datasets for a selected gene in a selected tissue type.